PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00133.5
Common NameAMTR_s00133p00027110
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family bHLH
Protein Properties Length: 248aa    MW: 27347.7 Da    PI: 6.6883
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00133.5genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11161208455
                                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                             +h+++Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  evm_27.model.AmTr_v1.0_scaffold00133.5 161 SHSIAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 208
                                             8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.94E-18155225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-9155212No hitNo description
Gene3DG3DSA:4.10.280.103.2E-18157226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.815157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-8161208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-10163213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MDPQQMMSES SSYNLGEIWP FSVNNIGDLN NGGFLQRSPH FPFGEMSNRG DVSVSVEESS  60
VTEQSGGEPP HSRKKRREAA VLDDESSKLV STSSGGDPLQ TGSEGMRLKA LTGSRENSVD  120
LKGEAEASAG NNQDEHKIQP VEPPKQDYIH VRARRGQATD SHSIAERARR EKISERMKIL  180
QDLVPGCNKV IGKALVLDEI INYIQSLQRQ VEFLSMKLEA VNSRMSSGIE GFPAKDFQCL  240
KKKLFVR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622770.11e-174PREDICTED: transcription factor bHLH79
SwissprotQ0JXE75e-65BPE_ARATH; Transcription factor BPE
TrEMBLW1P9P10.0W1P9P1_AMBTC; Uncharacterized protein
STRINGVIT_01s0026g01140.t012e-77(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-66BIG PETAL P
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]